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LOC119067672 irregular chiasm C-roughest protein [ Bradysia coprophila ]

Gene ID: 119067672, updated on 10-May-2024

Summary

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Gene symbol
LOC119067672
Gene description
irregular chiasm C-roughest protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Bradysia coprophila
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Sciaridae; Bradysia
Orthologs
fruit fly all
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Genomic context

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See LOC119067672 in Genome Data Viewer
Location:
chromosome: X
Exon count:
13
Annotation release Status Assembly Chr Location
100 current BU_Bcop_v1 (GCF_014529535.1) X Unlocalized Scaffold NW_023503295.1 (461743..563999, complement)

NW_023503295.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119067697 Neighboring gene UPF2 regulator of nonsense mediated mRNA decay Neighboring gene uncharacterized LOC119067702 Neighboring gene uncharacterized LOC119067703

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023503295 Chromosome X Unlocalized Scaffold Reference BU_Bcop_v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bradysia coprophila Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BU_Bcop_v1

Genomic

  1. NW_023503295.1 Reference BU_Bcop_v1

    Range
    461743..563999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037170779.1 → XP_037026674.1  irregular chiasm C-roughest protein isoform X2

    Conserved Domains (5) summary
    smart00410
    Location:52 → 146
    IG_like; Immunoglobulin like
    pfam08205
    Location:153 → 243
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:348 → 413
    Ig_3; Immunoglobulin domain
    cd00096
    Location:171 → 177
    Ig; Ig strand B [structural motif]
    cl11960
    Location:430 → 517
    Ig; Immunoglobulin domain

  2. XM_037170778.1 → XP_037026673.1  irregular chiasm C-roughest protein isoform X1

    Conserved Domains (5) summary
    smart00410
    Location:52 → 146
    IG_like; Immunoglobulin like
    pfam08205
    Location:153 → 243
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:348 → 413
    Ig_3; Immunoglobulin domain
    cd00096
    Location:171 → 177
    Ig; Ig strand B [structural motif]
    cl11960
    Location:430 → 517
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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