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LOC119060770 caspase-1-like [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

Gene ID: 119060770, updated on 30-Mar-2024

Summary

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Gene symbol
LOC119060770
Gene description
caspase-1-like
See related
EnsemblRapid:ENSAJMG00005010026
Gene type
protein coding
RefSeq status
MODEL
Organism
Artibeus jamaicensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
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Genomic context

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See LOC119060770 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521894.1 (11282324..11293464)

NW_026521894.1Genomic Context describing neighboring genes Neighboring gene caspase-13-like Neighboring gene caspase 1 Neighboring gene caspase-12-like Neighboring gene 60S ribosomal protein L10a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026521894 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables caspase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caspase-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSHL_Jam_final Primary Assembly

Genomic

  1. NW_026521894.1 Reference CSHL_Jam_final Primary Assembly

    Range
    11282324..11293464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053670477.1 → XP_053526452.1  caspase-1-like isoform X1

  2. XM_053670478.1 → XP_053526453.1  caspase-1-like isoform X1

  3. XM_053670479.1 → XP_053526454.1  caspase-1-like isoform X2

RNA

  1. XR_008392525.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases