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LOC119058924 beta-defensin 103A-like [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

Gene ID: 119058924, updated on 30-Mar-2024

Summary

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Gene symbol
LOC119058924
Gene description
beta-defensin 103A-like
See related
EnsemblRapid:ENSAJMG00005007086
Gene type
protein coding
RefSeq status
MODEL
Organism
Artibeus jamaicensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
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Genomic context

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See LOC119058924 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521967.1 (1870256..1871461, complement)

NW_026521967.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128628481 Neighboring gene uncharacterized LOC119058929 Neighboring gene sperm-associated antigen 11B-like Neighboring gene beta-defensin 106A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026521967 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CCR6 chemokine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chemoattractant activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-defensin 103A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSHL_Jam_final Primary Assembly

Genomic

  1. NW_026521967.1 Reference CSHL_Jam_final Primary Assembly

    Range
    1870256..1871461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037158422.2 → XP_037014317.1  beta-defensin 103A-like

    Related
    ENSAJMP00005010040.1
    Conserved Domains (1) summary
    pfam00711
    Location:29 → 64
    Defensin_beta; Beta defensin
Nucleotide Protein
Heading Accession and Version

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