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SDC1 syndecan 1 [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

Gene ID: 119053973, updated on 30-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
See related
EnsemblRapid:ENSAJMG00005018043
Gene type
protein coding
RefSeq status
MODEL
Organism
Artibeus jamaicensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521843.1 (9681516..9703233, complement)

NW_026521843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128627683 Neighboring gene uncharacterized LOC119053999 Neighboring gene pumilio RNA binding family member 2 Neighboring gene charged multivesicular body protein 2b-like Neighboring gene putative L-type amino acid transporter 1-like protein MLAS

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026521843 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSHL_Jam_final Primary Assembly

Genomic

  1. NW_026521843.1 Reference CSHL_Jam_final Primary Assembly

    Range
    9681516..9703233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053667100.1 → XP_053523075.1  syndecan-1

Nucleotide Protein
Heading Accession and Version

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