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SGCA sarcoglycan alpha [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

Gene ID: 119052648, updated on 30-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSAJMG00005011594
Gene type
protein coding
RefSeq status
MODEL
Organism
Artibeus jamaicensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521407.1 (3596080..3606174)

NW_026521407.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 14 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene collagen type I alpha 1 chain Neighboring gene TBC1 domain family member 25-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026521407 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSHL_Jam_final Primary Assembly

Genomic

  1. NW_026521407.1 Reference CSHL_Jam_final Primary Assembly

    Range
    3596080..3606174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037149985.2 → XP_037005880.2  alpha-sarcoglycan isoform X1

  2. XM_037149986.2 → XP_037005881.2  alpha-sarcoglycan isoform X1

  3. XM_037149987.2 → XP_037005882.2  alpha-sarcoglycan isoform X2

  4. XM_037149988.2 → XP_037005883.2  alpha-sarcoglycan isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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