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GPC6 glypican 6 [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

Gene ID: 119039670, updated on 30-Mar-2024

Summary

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Gene symbol
GPC6
Gene description
glypican 6
See related
EnsemblRapid:ENSAJMG00005016434
Gene type
protein coding
RefSeq status
MODEL
Organism
Artibeus jamaicensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
Orthologs
human mouse all
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Genomic context

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See GPC6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521823.1 (32806176..33808488)

NW_026521823.1Genomic Context describing neighboring genes Neighboring gene glypican 5 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026521823 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSHL_Jam_final Primary Assembly

Genomic

  1. NW_026521823.1 Reference CSHL_Jam_final Primary Assembly

    Range
    32806176..33808488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037132471.2 → XP_036988366.1  glypican-6 isoform X1

    Related
    ENSAJMP00005023692.1
    Conserved Domains (1) summary
    pfam01153
    Location:22 → 548
    Glypican

  2. XM_037132472.2 → XP_036988367.1  glypican-6 isoform X2

    Conserved Domains (1) summary
    pfam01153
    Location:1 → 478
    Glypican
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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