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kirrel1a kirre like nephrin family adhesion molecule 1a [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119027787, updated on 21-Mar-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
EnsemblRapid:ENSALTG00010016457
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 10 NC_051048.1 (15557948..15592414, complement)

Chromosome 10 - NC_051048.1Genomic Context describing neighboring genes Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene uncharacterized LOC119027565

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051048.1 Chromosome 10 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051048.1 Reference fAcaLat1.1 Primary Assembly

    Range
    15557948..15592414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037113237.1 → XP_036969132.1  kin of IRRE-like protein 1a isoform X2

    Related
    ENSALTP00010044895.1, ENSALTT00010048106.1
    Conserved Domains (4) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:121 → 124
    Ig; Ig strand A [structural motif]
    cd05898
    Location:389 → 492
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:120 → 217
    Ig; Immunoglobulin domain

  2. XM_037113236.1 → XP_036969131.1  kin of IRRE-like protein 1a isoform X1

    Related
    ENSALTP00010045012.1, ENSALTT00010048225.1
    Conserved Domains (4) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:121 → 124
    Ig; Ig strand A [structural motif]
    cd05898
    Location:389 → 492
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:120 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein
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