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galnt18b UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119018727, updated on 21-Mar-2024

Summary

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Gene symbol
galnt18b
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b
See related
EnsemblRapid:ENSALTG00010012017
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
human zebrafish all
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Genomic context

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See galnt18b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 4 NC_051042.1 (20992769..21073750, complement)

Chromosome 4 - NC_051042.1Genomic Context describing neighboring genes Neighboring gene murine retrovirus integration site 1 homolog Neighboring gene eukaryotic translation initiation factor 4, gamma 2a Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component Neighboring gene uncharacterized LOC119018294 Neighboring gene BTB (POZ) domain containing 10b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051042.1 Chromosome 4 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051042.1 Reference fAcaLat1.1 Primary Assembly

    Range
    20992769..21073750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037096612.1 → XP_036952507.1  polypeptide N-acetylgalactosaminyltransferase 18

    Related
    ENSALTP00010031226.1, ENSALTT00010033994.1
    Conserved Domains (2) summary
    cd02510
    Location:159 → 460
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:473 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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