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LOC119007510 monocyte differentiation antigen CD14-like [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119007510, updated on 14-Dec-2023

Summary

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Gene symbol
LOC119007510
Gene description
monocyte differentiation antigen CD14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
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Genomic context

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See LOC119007510 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 18 NC_051056.1 (19413229..19415910)

Chromosome 18 - NC_051056.1Genomic Context describing neighboring genes Neighboring gene bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain a Neighboring gene uncharacterized LOC119007830 Neighboring gene trichohyalin Neighboring gene solute carrier family 35 member A4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051056.1 Chromosome 18 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipopolysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipopolysaccharide-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor 4 signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of lipopolysaccharide receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
monocyte differentiation antigen CD14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051056.1 Reference fAcaLat1.1 Primary Assembly

    Range
    19413229..19415910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037077260.1 → XP_036933155.1  monocyte differentiation antigen CD14-like

    Conserved Domains (3) summary
    TIGR00864
    Location:336 → 414
    PCC; polycystin cation channel protein
    COG4886
    Location:188 → 362
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:189 → 217
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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