U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC119006805 plectin-like [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119006805, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC119006805
Gene description
plectin-like
See related
EnsemblRapid:ENSALTG00010002616
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC119006805 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
40
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 17 NC_051055.1 (8280126..8415929)

Chromosome 17 - NC_051055.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene uncharacterized LOC119005692 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_051055.1 Chromosome 17 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051055.1 Reference fAcaLat1.1 Primary Assembly

    Range
    8280126..8415929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037075902.1 → XP_036931797.1  plectin-like isoform X8

    Conserved Domains (10) summary
    PTZ00121
    Location:1824 → 2655
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4037 → 4068
    PLEC; Plectin repeat
    COG0419
    Location:1077 → 1613
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:661 → 850
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1365 → 2155
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4075 → 4114
    Plectin; Plectin repeat
    pfam17902
    Location:836 → 902
    SH3_10; SH3 domain
    pfam18373
    Location:937 → 1014
    Spectrin_like; Spectrin like domain
    cd21188
    Location:67 → 189
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:202 → 307
    CH_SF; calponin homology (CH) domain superfamily

  2. XM_037075903.1 → XP_036931798.1  plectin-like isoform X9

    Conserved Domains (10) summary
    PTZ00121
    Location:1818 → 2649
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4031 → 4062
    PLEC; Plectin repeat
    COG0419
    Location:1071 → 1607
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:655 → 844
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1359 → 2149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4069 → 4108
    Plectin; Plectin repeat
    pfam17902
    Location:830 → 896
    SH3_10; SH3 domain
    pfam18373
    Location:931 → 1008
    Spectrin_like; Spectrin like domain
    cd21188
    Location:67 → 183
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:196 → 301
    CH_SF; calponin homology (CH) domain superfamily

  3. XM_037075905.1 → XP_036931800.1  plectin-like isoform X10

    Related
    ENSALTP00010005084.1, ENSALTT00010006412.1
    Conserved Domains (10) summary
    PTZ00121
    Location:1798 → 2629
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4011 → 4042
    PLEC; Plectin repeat
    COG0419
    Location:1051 → 1587
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:643 → 832
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1339 → 2129
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4049 → 4088
    Plectin; Plectin repeat
    pfam17902
    Location:818 → 884
    SH3_10; SH3 domain
    pfam18373
    Location:919 → 996
    Spectrin_like; Spectrin like domain
    cd21188
    Location:67 → 171
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:184 → 289
    CH_SF; calponin homology (CH) domain superfamily

  4. XM_037075895.1 → XP_036931790.1  plectin-like isoform X1

    Conserved Domains (12) summary
    PTZ00121
    Location:3163 → 3994
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5376 → 5407
    PLEC; Plectin repeat
    COG0419
    Location:2416 → 2952
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:2000 → 2189
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2704 → 3494
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5414 → 5453
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2175 → 2241
    SH3_10; SH3 domain
    pfam18373
    Location:2276 → 2353
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1524
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1541 → 1646
    CH_SF; calponin homology (CH) domain superfamily

  5. XM_037075896.1 → XP_036931791.1  plectin-like isoform X2

    Conserved Domains (12) summary
    PTZ00121
    Location:3155 → 3986
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5368 → 5399
    PLEC; Plectin repeat
    COG0419
    Location:2408 → 2944
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:2000 → 2189
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2696 → 3486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5406 → 5445
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2175 → 2241
    SH3_10; SH3 domain
    pfam18373
    Location:2276 → 2353
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1524
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1541 → 1646
    CH_SF; calponin homology (CH) domain superfamily

  6. XM_037075898.1 → XP_036931793.1  plectin-like isoform X4

    Conserved Domains (12) summary
    PTZ00121
    Location:3151 → 3982
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5364 → 5395
    PLEC; Plectin repeat
    COG0419
    Location:2404 → 2940
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:1988 → 2177
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2692 → 3482
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5402 → 5441
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2163 → 2229
    SH3_10; SH3 domain
    pfam18373
    Location:2264 → 2341
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1512
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1529 → 1634
    CH_SF; calponin homology (CH) domain superfamily

  7. XM_037075897.1 → XP_036931792.1  plectin-like isoform X3

    Conserved Domains (12) summary
    PTZ00121
    Location:3153 → 3984
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5366 → 5397
    PLEC; Plectin repeat
    COG0419
    Location:2406 → 2942
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:1990 → 2179
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2694 → 3484
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5404 → 5443
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2165 → 2231
    SH3_10; SH3 domain
    pfam18373
    Location:2266 → 2343
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1518
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1531 → 1636
    CH_SF; calponin homology (CH) domain superfamily

  8. XM_037075899.1 → XP_036931794.1  plectin-like isoform X5

    Conserved Domains (12) summary
    PTZ00121
    Location:3145 → 3976
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5358 → 5389
    PLEC; Plectin repeat
    COG0419
    Location:2398 → 2934
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:1982 → 2171
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2686 → 3476
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5396 → 5435
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2157 → 2223
    SH3_10; SH3 domain
    pfam18373
    Location:2258 → 2335
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1506
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1523 → 1628
    CH_SF; calponin homology (CH) domain superfamily

  9. XM_037075900.1 → XP_036931795.1  plectin-like isoform X6

    Conserved Domains (12) summary
    PTZ00121
    Location:3137 → 3968
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5350 → 5381
    PLEC; Plectin repeat
    COG0419
    Location:2390 → 2926
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:1982 → 2171
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2678 → 3468
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5388 → 5427
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2157 → 2223
    SH3_10; SH3 domain
    pfam18373
    Location:2258 → 2335
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1506
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1523 → 1628
    CH_SF; calponin homology (CH) domain superfamily

  10. XM_037075901.1 → XP_036931796.1  plectin-like isoform X7

    Related
    ENSALTP00010005079.1, ENSALTT00010006407.1
    Conserved Domains (12) summary
    PTZ00121
    Location:3133 → 3964
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5346 → 5377
    PLEC; Plectin repeat
    COG0419
    Location:2386 → 2922
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    PRK13914
    Location:360 → 708
    PRK13914; invasion associated endopeptidase
    cd00176
    Location:1978 → 2167
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2674 → 3464
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:5384 → 5423
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:2153 → 2219
    SH3_10; SH3 domain
    pfam18373
    Location:2254 → 2331
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1402 → 1506
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1519 → 1624
    CH_SF; calponin homology (CH) domain superfamily

  11. XM_037075906.1 → XP_036931801.1  plectin-like isoform X11

    Conserved Domains (10) summary
    PTZ00121
    Location:1786 → 2617
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3999 → 4030
    PLEC; Plectin repeat
    COG0419
    Location:1039 → 1575
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:631 → 820
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1327 → 2117
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4037 → 4076
    Plectin; Plectin repeat
    pfam17902
    Location:806 → 872
    SH3_10; SH3 domain
    pfam18373
    Location:907 → 984
    Spectrin_like; Spectrin like domain
    cd21188
    Location:43 → 159
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:172 → 277
    CH_SF; calponin homology (CH) domain superfamily

  12. XM_037075907.1 → XP_036931802.1  plectin-like isoform X12

    Conserved Domains (10) summary
    PTZ00121
    Location:1782 → 2613
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3995 → 4026
    PLEC; Plectin repeat
    COG0419
    Location:1035 → 1571
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:619 → 808
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1323 → 2113
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4033 → 4072
    Plectin; Plectin repeat
    pfam17902
    Location:794 → 860
    SH3_10; SH3 domain
    pfam18373
    Location:895 → 972
    Spectrin_like; Spectrin like domain
    cd21188
    Location:43 → 147
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:160 → 265
    CH_SF; calponin homology (CH) domain superfamily

  13. XM_037075908.1 → XP_036931803.1  plectin-like isoform X13

    Related
    ENSALTP00010005077.1, ENSALTT00010006405.1
    Conserved Domains (10) summary
    PTZ00121
    Location:1774 → 2605
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3987 → 4018
    PLEC; Plectin repeat
    COG0419
    Location:1027 → 1563
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:619 → 808
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1315 → 2105
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4025 → 4064
    Plectin; Plectin repeat
    pfam17902
    Location:794 → 860
    SH3_10; SH3 domain
    pfam18373
    Location:895 → 972
    Spectrin_like; Spectrin like domain
    cd21188
    Location:43 → 147
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:160 → 265
    CH_SF; calponin homology (CH) domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.