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tlr18 toll-like receptor 18 [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119005747, updated on 21-Mar-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 17 NC_051055.1 (29273804..29295726)

Chromosome 17 - NC_051055.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119005917 Neighboring gene leucine rich repeat and Ig domain containing 4b Neighboring gene uncharacterized LOC119005309 Neighboring gene uncharacterized LOC119005310

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051055.1 Chromosome 17 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051055.1 Reference fAcaLat1.1 Primary Assembly

    Range
    29273804..29295726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037073636.1 → XP_036929531.1  toll-like receptor 18

    Conserved Domains (6) summary
    smart00255
    Location:677 → 815
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:324 → 553
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:74 → 97
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:385 → 413
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:96 → 155
    LRR_8; Leucine rich repeat
    cl08302
    Location:946 → 1036
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

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