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SMPD4 sphingomyelin phosphodiesterase 4 [ Sturnira hondurensis ]

Gene ID: 119001904, updated on 30-Mar-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnira hondurensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023524264.1 (1025644..1046648, complement)

NW_023524264.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 15 Neighboring gene uncharacterized LOC119001912 Neighboring gene coiled-coil domain-containing protein 74A-like Neighboring gene tubulin alpha-3 chain-like Neighboring gene mitotic spindle organizing protein 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023524264 Unplaced Scaffold Reference WHU_Shon_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference WHU_Shon_v2.1

Genomic

  1. NW_023524264.1 Reference WHU_Shon_v2.1

    Range
    1025644..1046648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037067476.1 → XP_036923371.1  sphingomyelin phosphodiesterase 4 isoform X1

    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_037067477.1 → XP_036923372.1  sphingomyelin phosphodiesterase 4 isoform X2

    Conserved Domains (1) summary
    pfam14724
    Location:8 → 743
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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