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CLGN calmegin [ Sturnira hondurensis ]

Gene ID: 118995446, updated on 30-Mar-2024

Summary

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Gene symbol
CLGN
Gene description
calmegin
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnira hondurensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
Orthologs
human mouse all
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Genomic context

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See CLGN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023516712.1 (17305500..17337410)

NW_023516712.1Genomic Context describing neighboring genes Neighboring gene ELMO domain containing 2 Neighboring gene MGAT4 family member D Neighboring gene short coiled-coil protein Neighboring gene uncharacterized LOC118995448

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023516712 Unplaced Scaffold Reference WHU_Shon_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmegin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference WHU_Shon_v2.1

Genomic

  1. NW_023516712.1 Reference WHU_Shon_v2.1

    Range
    17305500..17337410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037058486.1 → XP_036914381.1  calmegin isoform X2

    Conserved Domains (1) summary
    pfam00262
    Location:62 → 429
    Calreticulin; Calreticulin family

  2. XM_037058485.1 → XP_036914380.1  calmegin isoform X1

    Conserved Domains (1) summary
    pfam00262
    Location:74 → 441
    Calreticulin; Calreticulin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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