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CNTN6 contactin 6 [ Sturnira hondurensis ]

Gene ID: 118989598, updated on 30-Mar-2024

Summary

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Gene symbol
CNTN6
Gene description
contactin 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnira hondurensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
Orthologs
human mouse all
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Genomic context

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See CNTN6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023512848.1 (16223173..16388136)

NW_023512848.1Genomic Context describing neighboring genes Neighboring gene contactin-3-like Neighboring gene cell adhesion molecule L1 like Neighboring gene contactin 4 Neighboring gene interleukin 5 receptor subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023512848 Unplaced Scaffold Reference WHU_Shon_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference WHU_Shon_v2.1

Genomic

  1. NW_023512848.1 Reference WHU_Shon_v2.1

    Range
    16223173..16388136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037049922.1 → XP_036905817.1  contactin-6

    Conserved Domains (4) summary
    cd00063
    Location:1035 → 1132
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:1344 → 1424
    fn3; Fibronectin type III domain
    cd00096
    Location:664 → 669
    Ig; Ig strand A [structural motif]
    cl11960
    Location:664 → 752
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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