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DAG1 dystroglycan 1 [ Sturnira hondurensis ]

Gene ID: 118989476, updated on 30-Mar-2024

Summary

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Gene symbol
DAG1
Gene description
dystroglycan 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnira hondurensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
Orthologs
human mouse all
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Genomic context

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See DAG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023512848.1 (19877006..19929911, complement)

NW_023512848.1Genomic Context describing neighboring genes Neighboring gene acylaminoacyl-peptide hydrolase Neighboring gene bassoon presynaptic cytomatrix protein Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene aminomethyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023512848 Unplaced Scaffold Reference WHU_Shon_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle attachment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nerve development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of dystroglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dystroglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference WHU_Shon_v2.1

Genomic

  1. NW_023512848.1 Reference WHU_Shon_v2.1

    Range
    19877006..19929911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037049716.1 → XP_036905611.1  dystroglycan

    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    PRK14971
    Location:303 → 404
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05454
    Location:605 → 894
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    pfam18424
    Location:182 → 304
    a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2

  2. XM_037049715.1 → XP_036905610.1  dystroglycan

    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    PRK14971
    Location:303 → 404
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05454
    Location:605 → 894
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    pfam18424
    Location:182 → 304
    a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2

  3. XM_037049713.1 → XP_036905608.1  dystroglycan

    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    PRK14971
    Location:303 → 404
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05454
    Location:605 → 894
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    pfam18424
    Location:182 → 304
    a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2

  4. XM_037049714.1 → XP_036905609.1  dystroglycan

    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    PRK14971
    Location:303 → 404
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05454
    Location:605 → 894
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    pfam18424
    Location:182 → 304
    a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2
Nucleotide Protein
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