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VP_RS09435 pyridoxal phosphate-dependent class III aminotransferase [ Vibrio parahaemolyticus RIMD 2210633 ]

Gene ID: 1189449, updated on 4-Feb-2024

Summary

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Gene symbol
VP_RS09435
Gene description
pyridoxal phosphate-dependent class III aminotransferase
Locus tag
VP_RS09435
Gene type
protein coding
Organism
Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
VP1942
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Genomic context

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Location:
chromosome: 1
Sequence:
Chromosome: 1; NC_004603.1 (2030591..2033467, complement)

Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene carboxynorspermidine decarboxylase Neighboring gene carboxynorspermidine synthase Neighboring gene tRNA-Gly Neighboring gene tRNA-Leu

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004603.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
  2. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
pyridoxal phosphate-dependent class III aminotransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004603.1 Reference assembly

    Range
    2030591..2033467 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005490729.1 pyridoxal phosphate-dependent class III aminotransferase [Vibrio parahaemolyticus]

    See identical proteins and their annotated locations for WP_005490729.1

    UniProtKB/TrEMBL
    Q87NC6
    Conserved Domains (2) summary
    cd06450
    Location:564 → 953
    DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...
    cl18945
    Location:31 → 470
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
Heading Accession and Version

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