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LOC118938872 LARGE xylosyl- and glucuronyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 118938872, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118938872
Gene description
LARGE xylosyl- and glucuronyltransferase 1
See related
Ensembl:ENSOMYG00000068161
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118938872 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
15
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 15 NC_048579.1 (79148465..79293033)

Chromosome 15 - NC_048579.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase B-raf-like Neighboring gene ice nucleation protein-like Neighboring gene stimulated by retinoic acid gene 8 protein homolog Neighboring gene potassium voltage-gated channel subfamily A member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048579.1 Chromosome 15 Reference USDA_OmykA_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LARGE xylosyl- and glucuronyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048579.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    79148465..79293033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036945470.1 → XP_036801365.1  LARGE xylosyl- and glucuronyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7PSU5
    Conserved Domains (2) summary
    cd06431
    Location:145 → 424
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:480 → 749
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. XM_036945471.1 → XP_036801366.1  LARGE xylosyl- and glucuronyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7PSU5
    Conserved Domains (2) summary
    cd06431
    Location:145 → 424
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:480 → 749
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  3. XM_036945472.1 → XP_036801367.1  LARGE xylosyl- and glucuronyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7PSU5
    Related
    ENSOMYP00000026793.2, ENSOMYT00000029291.2
    Conserved Domains (2) summary
    pfam13896
    Location:284 → 553
    Glyco_transf_49; Glycosyl-transferase for dystroglycan
    cl11394
    Location:1 → 228
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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