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LOC118938868 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 118938868, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118938868
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSOMYG00000051075
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118938868 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 15 NC_048579.1 (78471597..78516510)

Chromosome 15 - NC_048579.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 4-like Neighboring gene transmembrane protein 178B Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like Neighboring gene uncharacterized LOC110507940 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene uncharacterized LOC118938869

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048579.1 Chromosome 15 Reference USDA_OmykA_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048579.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    78471597..78516510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036945442.1 → XP_036801337.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7V0A8, A0A8K9XVK2
    Conserved Domains (1) summary
    cl11394
    Location:68 → 338
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_036945443.1 → XP_036801338.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X4

    UniProtKB/TrEMBL
    A0A8C7V0A8
    Conserved Domains (1) summary
    cl11394
    Location:60 → 330
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_036945439.1 → XP_036801334.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7V0A8, A0A8L0DS27
    Related
    ENSOMYP00000140366.1, ENSOMYT00000157338.1
    Conserved Domains (1) summary
    cl11394
    Location:86 → 356
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_036945440.1 → XP_036801335.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7V0A8, A0A8L0DS27
    Conserved Domains (1) summary
    cl11394
    Location:86 → 356
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_036945441.1 → XP_036801336.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7V0A8
    Conserved Domains (1) summary
    cl11394
    Location:78 → 348
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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