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LOC118936293 beta-1,4 N-acetylgalactosaminyltransferase 2-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 118936293, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118936293
Gene description
beta-1,4 N-acetylgalactosaminyltransferase 2-like
See related
Ensembl:ENSOMYG00000041320
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118936293 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (33557105..33574585, complement)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene collagen, type I, alpha 1a Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a Neighboring gene N-acetylglutamate synthase Neighboring gene pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048577.1 Chromosome 13 Reference USDA_OmykA_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in UDP-N-acetylgalactosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UDP-N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    33557105..33574585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036940806.1 → XP_036796701.1  beta-1,4 N-acetylgalactosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A060X123, A0A8C7U996, A0A8K9Y203
    Related
    ENSOMYP00000089571.2, ENSOMYT00000097530.2
    Conserved Domains (1) summary
    cl11394
    Location:234 → 346
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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