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SP110 SP110 nuclear body protein [ Balaenoptera musculus (blue whale) ]

Gene ID: 118897813, updated on 20-Mar-2024

Summary

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Gene symbol
SP110
Gene description
SP110 nuclear body protein
See related
EnsemblRapid:ENSBMSG00010000251
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human all
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Genomic context

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See SP110 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
100 current mBalMus1.pri.v3 (GCF_009873245.2) 7 NC_045791.1 (104232938..104275542, complement)

Chromosome 7 - NC_045791.1Genomic Context describing neighboring genes Neighboring gene F-box protein 36 Neighboring gene lymphocyte antigen 6E-like Neighboring gene solute carrier family 16 member 14 Neighboring gene SP140 nuclear body protein Neighboring gene nuclear autoantigen Sp-100-like Neighboring gene calcium binding protein 39 Neighboring gene uncharacterized LOC118897729

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045791.1 Chromosome 7 Reference mBalMus1.pri.v3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sp110 nuclear body protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalMus1.pri.v3 Primary Assembly

Genomic

  1. NC_045791.1 Reference mBalMus1.pri.v3 Primary Assembly

    Range
    104232938..104275542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036857177.1 → XP_036713072.1  sp110 nuclear body protein isoform X7

    UniProtKB/TrEMBL
    A0A8B8XT44
    Conserved Domains (5) summary
    cd05501
    Location:610 → 709
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 341
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:544 → 585
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:452 → 527
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

  2. XM_036857170.1 → XP_036713065.1  sp110 nuclear body protein isoform X1

    UniProtKB/TrEMBL
    A0A8B8Y0U0
    Conserved Domains (5) summary
    cd05501
    Location:666 → 765
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 367
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:600 → 641
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:470 → 545
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

  3. XM_036857172.1 → XP_036713067.1  sp110 nuclear body protein isoform X3

    UniProtKB/TrEMBL
    A0A8B8XT39
    Conserved Domains (5) summary
    cd05501
    Location:664 → 763
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 341
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:598 → 639
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:468 → 543
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

  4. XM_036857173.1 → XP_036713068.1  sp110 nuclear body protein isoform X4

    UniProtKB/TrEMBL
    A0A8B8XT52
    Conserved Domains (5) summary
    cd05501
    Location:648 → 747
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 341
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:582 → 623
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:452 → 527
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

  5. XM_036857175.1 → XP_036713070.1  sp110 nuclear body protein isoform X6

    UniProtKB/TrEMBL
    A0A8B8Y0U5
    Related
    ENSBMSP00010034057.1, ENSBMST00010034709.1
    Conserved Domains (5) summary
    cd05501
    Location:627 → 726
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 367
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:561 → 602
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:470 → 545
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

  6. XM_036857174.1 → XP_036713069.1  sp110 nuclear body protein isoform X5

    UniProtKB/TrEMBL
    A0A8B8XTY7
    Conserved Domains (5) summary
    cd05501
    Location:628 → 727
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 367
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:562 → 603
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:470 → 545
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

  7. XM_036857171.1 → XP_036713066.1  sp110 nuclear body protein isoform X2

    UniProtKB/TrEMBL
    A0A8B8XU89
    Conserved Domains (5) summary
    cd05501
    Location:665 → 764
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    PHA03247
    Location:108 → 367
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:599 → 640
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:470 → 545
    SAND; SAND domain
    pfam03172
    Location:5 → 103
    HSR; HSR domain

RNA

  1. XR_005020549.1 RNA Sequence

    Related
    ENSBMST00010037635.1
Nucleotide Protein
Heading Accession and Version

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