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SGCA sarcoglycan alpha [ Balaenoptera musculus (blue whale) ]

Gene ID: 118887182, updated on 20-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSBMSG00010015088
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
100 current mBalMus1.pri.v3 (GCF_009873245.2) 20 NC_045804.1 (24529057..24538857, complement)

Chromosome 20 - NC_045804.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 92 Neighboring gene collagen type I alpha 1 chain Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene uncharacterized LOC118886689 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045804.1 Chromosome 20 Reference mBalMus1.pri.v3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalMus1.pri.v3 Primary Assembly

Genomic

  1. NC_045804.1 Reference mBalMus1.pri.v3 Primary Assembly

    Range
    24529057..24538857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036837815.1 → XP_036693710.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A8B8W9A6, A0A8C0DGG0
    Conserved Domains (1) summary
    pfam05510
    Location:42 → 363
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_036837814.1 → XP_036693709.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A8B8W9A6, A0A8C0DGG0
    Related
    ENSBMSP00010020739.1, ENSBMST00010022891.2
    Conserved Domains (1) summary
    pfam05510
    Location:42 → 363
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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