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UBXN2B UBX domain protein 2B [ Balaenoptera musculus (blue whale) ]

Gene ID: 118883438, updated on 20-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
See related
EnsemblRapid:ENSBMSG00010014672
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
100 current mBalMus1.pri.v3 (GCF_009873245.2) 17 NC_045801.1 (74860054..74890716, complement)

Chromosome 17 - NC_045801.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA33 Neighboring gene cytochrome P450 7A1 Neighboring gene U6 spliceosomal RNA Neighboring gene family with sequence similarity 110 member B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045801.1 Chromosome 17 Reference mBalMus1.pri.v3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalMus1.pri.v3 Primary Assembly

Genomic

  1. NC_045801.1 Reference mBalMus1.pri.v3 Primary Assembly

    Range
    74860054..74890716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036830282.1 → XP_036686177.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A8B8VNK6
    Related
    ENSBMSP00010020201.1, ENSBMST00010022305.2
    Conserved Domains (2) summary
    cd17161
    Location:251 → 332
    UBX_UBXN2B; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar proteins
    pfam08059
    Location:147 → 221
    SEP; SEP domain

  2. XM_036830281.1 → XP_036686176.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A8B8VMS4
    Conserved Domains (2) summary
    cd17161
    Location:263 → 344
    UBX_UBXN2B; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar proteins
    pfam08059
    Location:159 → 233
    SEP; SEP domain
Nucleotide Protein
Heading Accession and Version

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