U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sfrp1a secreted frizzled-related protein 1a [ Colossoma macropomum (tambaqui) ]

Gene ID: 118827593, updated on 20-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sfrp1a
Gene description
secreted frizzled-related protein 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sfrp1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494806.1 (34073970..34095565, complement)

NW_023494806.1Genomic Context describing neighboring genes Neighboring gene transcriptional and immune response regulator a Neighboring gene zinc finger, matrin-type 4a Neighboring gene lysyl oxidase-like 2b Neighboring gene histone H1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_023494806 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
secreted frizzled-related protein 1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494806.1 Reference Colossoma_macropomum

    Range
    34073970..34095565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036599013.1 → XP_036454906.1  secreted frizzled-related protein 1a

    Conserved Domains (2) summary
    cd03580
    Location:178 → 302
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:48 → 169
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases