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galnt16 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16 [ Colossoma macropomum (tambaqui) ]

Gene ID: 118823641, updated on 20-Mar-2024

Summary

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Gene symbol
galnt16
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
human zebrafish all
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Genomic context

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See galnt16 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494803.1 (26310860..26354597)

NW_023494803.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A-like Neighboring gene VPS39 subunit of HOPS complex Neighboring gene NUMB endocytic adaptor protein Neighboring gene exonuclease 3'-5' domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494803 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494803.1 Reference Colossoma_macropomum

    Range
    26310860..26354597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036593365.1 → XP_036449258.1  polypeptide N-acetylgalactosaminyltransferase 16

    Conserved Domains (2) summary
    cd02510
    Location:145 → 439
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:455 → 564
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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