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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Colossoma macropomum (tambaqui) ]

Gene ID: 118817804, updated on 20-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494798.1 (18472611..18609590)

NW_023494798.1Genomic Context describing neighboring genes Neighboring gene protein arginine N-methyltransferase 8-B Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene protein FAM180A-like Neighboring gene Xan_ur_permease domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494798 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494798.1 Reference Colossoma_macropomum

    Range
    18472611..18609590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036584743.1 → XP_036440636.1  protein O-mannosyl-transferase TMTC2

    Conserved Domains (4) summary
    COG0457
    Location:484 → 725
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:646 → 826
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:496 → 524
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:250 → 323
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases