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ano5b anoctamin 5b [ Colossoma macropomum (tambaqui) ]

Gene ID: 118817477, updated on 20-Mar-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494797.1 (8661171..8713342, complement)

NW_023494797.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2b Neighboring gene solute carrier family 17 member 6b Neighboring gene tumor suppressing subtransferable candidate 4 Neighboring gene anoctamin 9b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494797 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494797.1 Reference Colossoma_macropomum

    Range
    8661171..8713342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036584201.1 → XP_036440094.1  anoctamin-5b isoform X1

    Conserved Domains (2) summary
    pfam04547
    Location:292 → 878
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:72 → 289
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_036584202.1 → XP_036440095.1  anoctamin-5b isoform X2

    Conserved Domains (2) summary
    pfam04547
    Location:277 → 863
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:57 → 274
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_036584204.1 → XP_036440097.1  anoctamin-5b isoform X4

    Conserved Domains (2) summary
    pfam04547
    Location:181 → 767
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:1 → 178
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  4. XM_036584205.1 → XP_036440098.1  anoctamin-5b isoform X4

    Conserved Domains (2) summary
    pfam04547
    Location:181 → 767
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:1 → 178
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  5. XM_036584203.1 → XP_036440096.1  anoctamin-5b isoform X3

    Conserved Domains (2) summary
    pfam04547
    Location:241 → 827
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:21 → 238
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
Heading Accession and Version

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