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zgc:112962 uncharacterized LOC118813731 [ Colossoma macropomum (tambaqui) ]

Gene ID: 118813731, updated on 20-Mar-2024

Summary

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Gene symbol
zgc:112962
Gene description
uncharacterized LOC118813731
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
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Genomic context

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See zgc:112962 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494793.1 (32805105..32814402, complement)

NW_023494793.1Genomic Context describing neighboring genes Neighboring gene cell wall protein DAN4-like Neighboring gene torsin-1A-interacting protein 1 Neighboring gene aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 Neighboring gene transmembrane and coiled-coil domains 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494793 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 1; torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494793.1 Reference Colossoma_macropomum

    Range
    32805105..32814402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036579231.1 → XP_036435124.1  torsin-1A-interacting protein 2 isoform X1

    Conserved Domains (2) summary
    TIGR00927
    Location:21 → 238
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05609
    Location:225 → 476
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_036579233.1 → XP_036435126.1  torsin-1A-interacting protein 2 isoform X2

    Conserved Domains (2) summary
    TIGR00927
    Location:5 → 222
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05609
    Location:209 → 460
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_036579236.1 → XP_036435129.1  torsin-1A-interacting protein 1 isoform X5

    Conserved Domains (1) summary
    pfam05609
    Location:139 → 390
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_036579235.1 → XP_036435128.1  torsin-1A-interacting protein 1 isoform X4

    Conserved Domains (1) summary
    pfam05609
    Location:139 → 390
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  5. XM_036579237.1 → XP_036435130.1  torsin-1A-interacting protein 1 isoform X6

    Conserved Domains (1) summary
    pfam05609
    Location:123 → 374
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  6. XM_036579230.1 → XP_036435123.1  torsin-1A-interacting protein 2 isoform X1

    Conserved Domains (2) summary
    TIGR00927
    Location:21 → 238
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05609
    Location:225 → 476
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  7. XM_036579234.1 → XP_036435127.1  torsin-1A-interacting protein 2 isoform X3

    Conserved Domains (2) summary
    TIGR00927
    Location:10 → 195
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05609
    Location:182 → 433
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  8. XM_036579232.1 → XP_036435125.1  torsin-1A-interacting protein 2 isoform X2

    Conserved Domains (2) summary
    TIGR00927
    Location:5 → 222
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05609
    Location:209 → 460
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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