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ano5a anoctamin 5a [ Colossoma macropomum (tambaqui) ]

Gene ID: 118811641, updated on 20-Mar-2024

Summary

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Gene symbol
ano5a
Gene description
anoctamin 5a
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
human zebrafish all
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Genomic context

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See ano5a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494792.1 (12305915..12337976, complement)

NW_023494792.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 6a Neighboring gene succinate receptor 1-like Neighboring gene anoctamin-9 Neighboring gene single immunoglobulin and toll-interleukin 1 receptor (TIR) domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494792 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494792.1 Reference Colossoma_macropomum

    Range
    12305915..12337976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036576000.1 → XP_036431893.1  anoctamin-5 isoform X1

    Conserved Domains (2) summary
    pfam04547
    Location:346 → 936
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:126 → 343
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_036576002.1 → XP_036431895.1  anoctamin-5 isoform X3

    Conserved Domains (2) summary
    pfam04547
    Location:335 → 925
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:115 → 332
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_036576003.1 → XP_036431896.1  anoctamin-5 isoform X4

    Conserved Domains (2) summary
    pfam04547
    Location:288 → 878
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:68 → 285
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  4. XM_036576001.1 → XP_036431894.1  anoctamin-5 isoform X2

    Conserved Domains (2) summary
    pfam04547
    Location:346 → 934
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:126 → 343
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  5. XM_036576004.1 → XP_036431897.1  anoctamin-5 isoform X5

    Conserved Domains (2) summary
    pfam04547
    Location:277 → 867
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:57 → 274
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  6. XM_036576007.1 → XP_036431900.1  anoctamin-5 isoform X7

    Conserved Domains (2) summary
    pfam04547
    Location:277 → 865
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:57 → 274
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  7. XM_036576005.1 → XP_036431898.1  anoctamin-5 isoform X6

    Conserved Domains (2) summary
    pfam04547
    Location:244 → 834
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:24 → 241
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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