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ndst1a N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a [ Colossoma macropomum (tambaqui) ]

Gene ID: 118811447, updated on 20-Mar-2024

Summary

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Gene symbol
ndst1a
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
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Genomic context

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See ndst1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494792.1 (4974648..5048296)

NW_023494792.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member A4 Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain a Neighboring gene bicaudal C homolog 2 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494792 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494792.1 Reference Colossoma_macropomum

    Range
    4974648..5048296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036575657.1 → XP_036431550.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    Conserved Domains (2) summary
    pfam00685
    Location:602 → 852
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:28 → 512
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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