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zgc:165582 uncharacterized LOC118806109 [ Colossoma macropomum (tambaqui) ]

Gene ID: 118806109, updated on 20-Mar-2024

Summary

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Gene symbol
zgc:165582
Gene description
uncharacterized LOC118806109
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
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Genomic context

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See zgc:165582 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494787.1 (42745191..42768442)

NW_023494787.1Genomic Context describing neighboring genes Neighboring gene epsin 3a Neighboring gene ADP-ribosylation factor-like 16 Neighboring gene 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like Neighboring gene adhesion G protein-coupled receptor E5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494787 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9; adhesion G protein-coupled receptor E1; adhesion G protein-coupled receptor L4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494787.1 Reference Colossoma_macropomum

    Range
    42745191..42768442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036567449.1 → XP_036423342.1  adhesion G protein-coupled receptor E1 isoform X2

    Conserved Domains (1) summary
    smart00179
    Location:94 → 126
    EGF_CA; Calcium-binding EGF-like domain

  2. XM_036567451.1 → XP_036423344.1  adhesion G protein-coupled receptor L4 isoform X3

    Conserved Domains (1) summary
    smart00179
    Location:22 → 54
    EGF_CA; Calcium-binding EGF-like domain

  3. XM_036567448.1 → XP_036423341.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X1

    Conserved Domains (2) summary
    pfam00852
    Location:174 → 343
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:46 → 149
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  4. XM_036567450.1 → XP_036423343.1  adhesion G protein-coupled receptor E1 isoform X2

    Conserved Domains (1) summary
    smart00179
    Location:94 → 126
    EGF_CA; Calcium-binding EGF-like domain
Nucleotide Protein
Heading Accession and Version

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