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SGCD sarcoglycan delta [ Pipistrellus kuhlii (Kuhl's pipistrelle) ]

Gene ID: 118710972, updated on 30-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Locus tag
mPipKuh1_015691
Gene type
protein coding
RefSeq status
MODEL
Organism
Pipistrellus kuhlii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Pipistrellus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current mPipKuh1.p (GCF_014108245.1) Unplaced Scaffold NW_023425584.1 (14310158..14725857, complement)

NW_023425584.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4 Neighboring gene nuclear prelamin A recognition factor-like Neighboring gene succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023425584 Unplaced Scaffold Reference mPipKuh1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pipistrellus kuhlii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPipKuh1.p

Genomic

  1. NW_023425584.1 Reference mPipKuh1.p

    Range
    14310158..14725857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036423826.2 → XP_036279719.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A7J7XCG4, A0A7J7XDH2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_036423825.2 → XP_036279718.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A7J7XCG4, A0A7J7XDH2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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