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PLS1 plastin 1 [ Molothrus ater ]

Gene ID: 118690313, updated on 10-Oct-2024

Summary

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Gene symbol
PLS1
Gene description
plastin 1
See related
EnsemblRapid:ENSMRTG00000005763
Gene type
protein coding
RefSeq status
MODEL
Organism
Molothrus ater
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Icteridae; Molothrus
Orthologs
human mouse all
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Genomic context

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See PLS1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current BPBGC_Mater_1.1 (GCF_012460135.2) 10 NC_050487.2 (11200853..11241855)
100 previous assembly BPBGC_Mater_1.0 (GCF_012460135.1) 9 NC_050486.1 (14550245..14591247, complement)

Chromosome 10 - NC_050487.2Genomic Context describing neighboring genes Neighboring gene 5'-3' exoribonuclease 1 Neighboring gene ATR serine/threonine kinase Neighboring gene transient receptor potential cation channel subfamily C member 1 Neighboring gene uncharacterized LOC118690087 Neighboring gene procollagen C-endopeptidase enhancer 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plastin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_012460135.2-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BPBGC_Mater_1.1 Primary Assembly

Genomic

  1. NC_050487.2 Reference BPBGC_Mater_1.1 Primary Assembly

    Range
    11200853..11241855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036389132.1 → XP_036245025.1  plastin-1

    UniProtKB/TrEMBL
    A0A7L3VG71
    Conserved Domains (3) summary
    COG5069
    Location:20 → 622
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:392 → 509
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  2. XM_036389133.2 → XP_036245026.1  plastin-1

    UniProtKB/TrEMBL
    A0A7L3VG71
    Conserved Domains (3) summary
    COG5069
    Location:20 → 622
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:392 → 509
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  3. XM_054515940.1 → XP_054371915.1  plastin-1

  4. XM_036389135.2 → XP_036245028.1  plastin-1

    UniProtKB/TrEMBL
    A0A7L3VG71
    Related
    ENSMRTP00000008667.1
    Conserved Domains (3) summary
    COG5069
    Location:20 → 622
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:392 → 509
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1
Nucleotide Protein
Heading Accession and Version

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