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RXRA retinoid X receptor alpha [ Molossus molossus (Pallas's mastiff bat) ]

Gene ID: 118629388, updated on 30-Mar-2024

Summary

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Gene symbol
RXRA
Gene description
retinoid X receptor alpha
Locus tag
HJG59_016010
Gene type
protein coding
RefSeq status
MODEL
Organism
Molossus molossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Molossidae; Molossus
Orthologs
human mouse all
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Genomic context

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See RXRA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current mMolMol1.p (GCF_014108415.1) Unplaced Scaffold NW_023425349.1 (2313872..2396545, complement)

NW_023425349.1Genomic Context describing neighboring genes Neighboring gene olfactomedin 1 Neighboring gene collagen type V alpha 1 chain Neighboring gene U6atac minor spliceosomal RNA Neighboring gene WD repeat domain 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023425349 Unplaced Scaffold Reference mMolMol1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Molossus molossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMolMol1.p

Genomic

  1. NW_023425349.1 Reference mMolMol1.p

    Range
    2313872..2396545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036260410.1 → XP_036116303.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A7J8EGF1
    Conserved Domains (3) summary
    cd06943
    Location:227 → 438
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:131 → 207
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:18 → 124
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_036260411.1 → XP_036116304.1  retinoic acid receptor RXR-alpha isoform X2

    Conserved Domains (3) summary
    cd06943
    Location:161 → 372
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:65 → 141
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 58
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_036260412.1 → XP_036116305.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A7J8EGK1
    Conserved Domains (3) summary
    cd06943
    Location:132 → 343
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:36 → 112
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 29
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
Nucleotide Protein
Heading Accession and Version

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