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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Molossus molossus (Pallas's mastiff bat) ]

Gene ID: 118623048, updated on 30-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
HJG59_018515
Gene type
protein coding
RefSeq status
MODEL
Organism
Molossus molossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Molossidae; Molossus
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current mMolMol1.p (GCF_014108415.1) Unplaced Scaffold NW_023425403.1 (50793835..50869154, complement)

NW_023425403.1Genomic Context describing neighboring genes Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene 39S ribosomal protein L47, mitochondrial-like Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA32 Neighboring gene 60S ribosomal protein L9-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023425403 Unplaced Scaffold Reference mMolMol1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Molossus molossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMolMol1.p

Genomic

  1. NW_023425403.1 Reference mMolMol1.p

    Range
    50793835..50869154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036250615.1 → XP_036106508.1  protein O-mannosyl-transferase TMTC4 isoform X1

    UniProtKB/TrEMBL
    A0A7J8GM20
    Conserved Domains (3) summary
    TIGR02917
    Location:456 → 727
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_036250620.1 → XP_036106513.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:353 → 624
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:377 → 405
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:189 → 261
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_036250622.1 → XP_036106515.1  protein O-mannosyl-transferase TMTC4 isoform X7

    Conserved Domains (3) summary
    TIGR02917
    Location:345 → 616
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:369 → 397
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:181 → 253
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_036250621.1 → XP_036106514.1  protein O-mannosyl-transferase TMTC4 isoform X6

    Conserved Domains (3) summary
    COG0457
    Location:461 → 623
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:508 → 534
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_036250616.1 → XP_036106509.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:469 → 691
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  6. XM_036250618.1 → XP_036106511.1  protein O-mannosyl-transferase TMTC4 isoform X3

    Conserved Domains (3) summary
    COG0457
    Location:479 → 667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  7. XM_036250619.1 → XP_036106512.1  protein O-mannosyl-transferase TMTC4 isoform X4

    Conserved Domains (3) summary
    COG0457
    Location:479 → 667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

RNA

  1. XR_004958178.1 RNA Sequence

  2. XR_004958175.1 RNA Sequence

  3. XR_004958179.1 RNA Sequence

  4. XR_004958177.1 RNA Sequence

  5. XR_004958176.1 RNA Sequence

Nucleotide Protein
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