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Gm54002 predicted gene, 54002 [ Mus musculus (house mouse) ]

Gene ID: 118568335, updated on 17-Aug-2024

Summary

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Official Symbol
Gm54002provided by MGI
Official Full Name
predicted gene, 54002provided by MGI
Primary source
MGI:MGI:6723037
See related
AllianceGenome:MGI:6723037
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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Location:
17 B1; 17
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36415065..36417747)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene 8810 Neighboring gene histocompatibility 2, blastocyst Neighboring gene STARR-seq mESC enhancer starr_42485 Neighboring gene STARR-seq mESC enhancer starr_42486 Neighboring gene histocompatibility 2, T region locus, pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10950 Neighboring gene ribosomal protein S6 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E169 Neighboring gene histocompatibility 2, T region locus 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000083.7 Chromosome 17 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein Gm54002

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    36415065..36417747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160889.1 → XP_036016782.1  uncharacterized protein Gm54002 isoform X1

    Conserved Domains (2) summary
    pfam00665
    Location:107 → 179
    rve; Integrase core domain
    pfam18697
    Location:162 → 239
    MLVIN_C; Murine leukemia virus (MLV) integrase (IN) C-terminal domain

  2. XM_036160891.1 → XP_036016784.1  uncharacterized protein Gm54002 isoform X3

    Conserved Domains (2) summary
    pfam00665
    Location:82 → 154
    rve; Integrase core domain
    pfam18697
    Location:137 → 214
    MLVIN_C; Murine leukemia virus (MLV) integrase (IN) C-terminal domain

  3. XM_036160890.1 → XP_036016783.1  uncharacterized protein Gm54002 isoform X2

    Conserved Domains (2) summary
    pfam00665
    Location:96 → 168
    rve; Integrase core domain
    pfam18697
    Location:151 → 228
    MLVIN_C; Murine leukemia virus (MLV) integrase (IN) C-terminal domain

RNA

  1. XR_004939717.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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