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SFTPA1 surfactant protein A1 [ Halichoerus grypus (gray seal) ]

Gene ID: 118534131, updated on 20-Mar-2024

Summary

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Gene symbol
SFTPA1
Gene description
surfactant protein A1
Gene type
protein coding
RefSeq status
MODEL
Organism
Halichoerus grypus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Halichoerus
Orthologs
human all
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Genomic context

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See SFTPA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Tufts_HGry_1.1 (GCF_012393455.1) Unplaced Scaffold NW_023403813.1 (1304850..1309697)

NW_023403813.1Genomic Context describing neighboring genes Neighboring gene DPY30 domain containing 1 Neighboring gene DPY30 domain containing 2 Neighboring gene methionine adenosyltransferase 1A Neighboring gene mannose binding lectin 2 Neighboring gene surfactant protein D

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023403813 Unplaced Scaffold Reference Tufts_HGry_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Halichoerus grypus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tufts_HGry_1.1

Genomic

  1. NW_023403813.1 Reference Tufts_HGry_1.1

    Range
    1304850..1309697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036089785.1 → XP_035945678.1  pulmonary surfactant-associated protein A1 isoform X2

    Conserved Domains (2) summary
    cd03591
    Location:136 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:28 → 98
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_036089783.1 → XP_035945676.1  pulmonary surfactant-associated protein A1 isoform X1

    Conserved Domains (2) summary
    cd03591
    Location:165 → 277
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:57 → 127
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_036089786.1 → XP_035945679.1  pulmonary surfactant-associated protein A1 isoform X3

    Conserved Domains (2) summary
    cd03591
    Location:125 → 237
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:57 → 89
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_036089784.1 → XP_035945677.1  pulmonary surfactant-associated protein A1 isoform X2

    Conserved Domains (2) summary
    cd03591
    Location:136 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:28 → 98
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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