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LOC118487995 carboxyl-terminal-processing peptidase 1, chloroplastic-like [ Helianthus annuus (common sunflower) ]

Gene ID: 118487995, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118487995
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic-like
Locus tag
HanXRQr2_Chr16g0769211
Gene type
protein coding
RefSeq status
MODEL
Organism
Helianthus annuus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Genomic context

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See LOC118487995 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
101 current HanXRQr2.0-SUNRISE (GCF_002127325.2) 16 NC_035448.2 (183213223..183217579)

Chromosome 16 - NC_035448.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110917296 Neighboring gene uncharacterized LOC110920132 Neighboring gene uncharacterized LOC118487996 Neighboring gene protein MEI2-like 2 Neighboring gene uncharacterized LOC110916611

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035448.2 Chromosome 16 Reference HanXRQr2.0-SUNRISE Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic-like
Names
putative processing peptidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Helianthus annuus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HanXRQr2.0-SUNRISE Primary Assembly

Genomic

  1. NC_035448.2 Reference HanXRQr2.0-SUNRISE Primary Assembly

    Range
    183213223..183217579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035984954.1 → XP_035840847.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like

    UniProtKB/TrEMBL
    A0A9K3DUK8
    Conserved Domains (1) summary
    PLN00049
    Location:104 → 445
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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