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LOC118432047 ubiquitin-like-conjugating enzyme ATG10 [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118432047, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118432047
Gene description
ubiquitin-like-conjugating enzyme ATG10
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118432047 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 15 NC_049993.1 (6973779..6995892)

Chromosome 15 - NC_049993.1Genomic Context describing neighboring genes Neighboring gene mucin-2-like Neighboring gene single-stranded DNA-binding protein 3-like Neighboring gene uncharacterized LOC118432049 Neighboring gene receptor-transporting protein 4-like Neighboring gene uncharacterized LOC118432050

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049993.1 Chromosome 15 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg12 transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein modification by small protein conjugation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049993.1 Reference Bfl_VNyyK Primary Assembly

    Range
    6973779..6995892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035843554.1 → XP_035699447.1  ubiquitin-like-conjugating enzyme ATG10

    UniProtKB/TrEMBL
    A0A9J7MDW2
    Conserved Domains (1) summary
    pfam03987
    Location:11 → 207
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
Nucleotide Protein Strain
Heading Accession and Version

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