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LOC118430302 phosphoinositide 3-kinase regulatory subunit 4-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118430302, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118430302
Gene description
phosphoinositide 3-kinase regulatory subunit 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC118430302 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
34
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 14 NC_049992.1 (12284851..12313558, complement)

Chromosome 14 - NC_049992.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118430399 Neighboring gene nose resistant to fluoxetine protein 6-like Neighboring gene mucin-5AC-like Neighboring gene ATP-binding cassette sub-family F member 3-like Neighboring gene uncharacterized LOC118430373

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049992.1 Chromosome 14 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy of peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus-vacuole junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoinositide 3-kinase regulatory subunit 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049992.1 Reference Bfl_VNyyK Primary Assembly

    Range
    12284851..12313558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035841048.1 → XP_035696941.1  phosphoinositide 3-kinase regulatory subunit 4-like isoform X2

    UniProtKB/TrEMBL
    A0A9J7M8W2, C3ZYW7
    Conserved Domains (6) summary
    COG2319
    Location:1220 → 1395
    WD40; WD40 repeat [General function prediction only]
    cd13980
    Location:25 → 321
    STKc_Vps15; Catalytic domain of the Serine/Threonine kinase, Vacuolar protein sorting-associated protein 15
    sd00044
    Location:540 → 569
    HEAT; HEAT repeat [structural motif]
    sd00039
    Location:1036 → 1079
    7WD40; WD40 repeat [structural motif]
    pfam13513
    Location:401 → 446
    HEAT_EZ; HEAT-like repeat
    cl29593
    Location:1008 → 1304
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_035841047.1 → XP_035696940.1  phosphoinositide 3-kinase regulatory subunit 4-like isoform X1

    UniProtKB/TrEMBL
    A0A9J7MD05, C3ZYW7
    Conserved Domains (6) summary
    COG2319
    Location:1235 → 1410
    WD40; WD40 repeat [General function prediction only]
    cd13980
    Location:25 → 321
    STKc_Vps15; Catalytic domain of the Serine/Threonine kinase, Vacuolar protein sorting-associated protein 15
    sd00044
    Location:555 → 584
    HEAT; HEAT repeat [structural motif]
    sd00039
    Location:1051 → 1094
    7WD40; WD40 repeat [structural motif]
    pfam13513
    Location:416 → 461
    HEAT_EZ; HEAT-like repeat
    cl29593
    Location:1023 → 1319
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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