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LOC118425715 vam6/Vps39-like protein [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118425715, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118425715
Gene description
vam6/Vps39-like protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC118425715 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 1 NC_049979.1 (25246719..25308304)

Chromosome 1 - NC_049979.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 74A-like Neighboring gene polycomb protein suz12-like Neighboring gene spectrin beta chain, non-erythrocytic 1-like Neighboring gene uncharacterized LOC118418060 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like Neighboring gene REST corepressor 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049979.1 Chromosome 1 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vam6/Vps39-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049979.1 Reference Bfl_VNyyK Primary Assembly

    Range
    25246719..25308304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035834766.1 → XP_035690659.1  vam6/Vps39-like protein isoform X1

    UniProtKB/TrEMBL
    A0A9J7LZP6
    Conserved Domains (3) summary
    pfam10366
    Location:452 → 554
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:763 → 871
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:24 → 286
    CNH; CNH domain

  2. XM_035834775.1 → XP_035690668.1  vam6/Vps39-like protein isoform X2

    UniProtKB/TrEMBL
    A0A9J7LY94
    Conserved Domains (3) summary
    pfam10366
    Location:451 → 553
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:762 → 870
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:24 → 286
    CNH; CNH domain
Nucleotide Protein Strain
Heading Accession and Version

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