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LOC118421304 uncharacterized LOC118421304 [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118421304, updated on 26-Jun-2024

Summary

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Gene symbol
LOC118421304
Gene description
uncharacterized LOC118421304
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC118421304 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
32
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 8 NC_049986.1 (6110504..6134069)

Chromosome 8 - NC_049986.1Genomic Context describing neighboring genes Neighboring gene protein-associating with the carboxyl-terminal domain of ezrin-like Neighboring gene uncharacterized LOC118421163 Neighboring gene UDP-glucuronosyltransferase 2C1-like Neighboring gene uncharacterized LOC118421474 Neighboring gene uncharacterized LOC118421164

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049986.1 Chromosome 8 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC118421304

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049986.1 Reference Bfl_VNyyK Primary Assembly

    Range
    6110504..6134069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035828537.1 → XP_035684430.1  uncharacterized protein LOC118421304

    UniProtKB/TrEMBL
    A0A9J7LMF5
    Conserved Domains (4) summary
    smart00454
    Location:1386 → 1448
    SAM; Sterile alpha motif
    cd00057
    Location:657 → 818
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cl11394
    Location:826 → 984
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl15755
    Location:1324 → 1377
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein Strain
Heading Accession and Version

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