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LOC118419511 carbohydrate sulfotransferase 14-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118419511, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118419511
Gene description
carbohydrate sulfotransferase 14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC118419511 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 7 NC_049985.1 (4542915..4547055)

Chromosome 7 - NC_049985.1Genomic Context describing neighboring genes Neighboring gene LIM and calponin homology domains-containing protein 1-like Neighboring gene FAM10 family protein At4g22670-like Neighboring gene xaa-Pro aminopeptidase 3-like Neighboring gene trace amine-associated receptor 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049985.1 Chromosome 7 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049985.1 Reference Bfl_VNyyK Primary Assembly

    Range
    4542915..4547055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035825922.1 → XP_035681815.1  carbohydrate sulfotransferase 14-like

    UniProtKB/TrEMBL
    A0A9J7MWW0
    Conserved Domains (1) summary
    pfam03567
    Location:107 → 329
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
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