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LOC118418867 transcription factor SPT20 homolog [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118418867, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118418867
Gene description
transcription factor SPT20 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118418867 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
27
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 7 NC_049985.1 (5904782..6013627, complement)

Chromosome 7 - NC_049985.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase DTX3 Neighboring gene coelenterazine h 2-monooxygenase-like Neighboring gene ubiquitin-60S ribosomal protein L40 Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3 Neighboring gene formimidoyltransferase-cyclodeaminase-like Neighboring gene putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 Neighboring gene uncharacterized LOC118418999 Neighboring gene TLC domain-containing protein 4-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049985.1 Chromosome 7 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPT20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049985.1 Reference Bfl_VNyyK Primary Assembly

    Range
    5904782..6013627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035824971.1 → XP_035680864.1  transcription factor SPT20 homolog isoform X8

    UniProtKB/TrEMBL
    A0A9J7LF43, C3XXU0
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 216
    Spt20; Spt20 family

  2. XM_035824966.1 → XP_035680859.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A9J7LDG9, C3XXU0
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 221
    Spt20; Spt20 family

  3. XM_035824969.1 → XP_035680862.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A9J7LE82, C3XXU0
    Conserved Domains (1) summary
    pfam12090
    Location:66 → 217
    Spt20; Spt20 family

  4. XM_035824967.1 → XP_035680860.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A9J7LEZ0, C3XXU0
    Conserved Domains (1) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family

  5. XM_035824972.1 → XP_035680865.1  transcription factor SPT20 homolog isoform X9

    UniProtKB/TrEMBL
    A0A9J7LFM7, C3XXU0
    Conserved Domains (1) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family

  6. XM_035824973.1 → XP_035680866.1  transcription factor SPT20 homolog isoform X10

    UniProtKB/TrEMBL
    A0A9J7MVY6
    Conserved Domains (1) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family

  7. XM_035824970.1 → XP_035680863.1  transcription factor SPT20 homolog isoform X7

    UniProtKB/TrEMBL
    A0A9J7LDH0, C3XXU0
    Conserved Domains (2) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family
    cl28910
    Location:689 → 833
    MFS; Major Facilitator Superfamily

  8. XM_035824968.1 → XP_035680861.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A9J7LDK4, C3XXU0
    Conserved Domains (2) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family
    cl28910
    Location:689 → 834
    MFS; Major Facilitator Superfamily

  9. XM_035824965.1 → XP_035680858.1  transcription factor SPT20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A9J7LFS8, C3XXU0
    Conserved Domains (2) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family
    cl28910
    Location:689 → 838
    MFS; Major Facilitator Superfamily

  10. XM_035824963.1 → XP_035680856.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A9J7MUX7, C3XXU0
    Conserved Domains (1) summary
    pfam12090
    Location:66 → 222
    Spt20; Spt20 family
Nucleotide Protein Strain
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