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LOC118416263 beclin 1-associated autophagy-related key regulator-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118416263, updated on 11-Apr-2024

Summary

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Gene symbol
LOC118416263
Gene description
beclin 1-associated autophagy-related key regulator-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118416263 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 1 NC_049979.1 (13372409..13380106, complement)

Chromosome 1 - NC_049979.1Genomic Context describing neighboring genes Neighboring gene TATA-box-binding protein 2-like Neighboring gene bromodomain adjacent to zinc finger domain protein 1A-like Neighboring gene fos-related antigen 2-like Neighboring gene uncharacterized LOC118416309 Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049979.1 Chromosome 1 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of omegasome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondria-associated endoplasmic reticulum membrane contact site IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beclin 1-associated autophagy-related key regulator-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049979.1 Reference Bfl_VNyyK Primary Assembly

    Range
    13372409..13380106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035821361.1 → XP_035677254.1  beclin 1-associated autophagy-related key regulator-like isoform X2

    UniProtKB/TrEMBL
    A0A9J7MSI2, C3Y0C3
    Conserved Domains (1) summary
    pfam10186
    Location:42 → 416
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

  2. XM_035821353.1 → XP_035677246.1  beclin 1-associated autophagy-related key regulator-like isoform X1

    UniProtKB/TrEMBL
    A0A9J7L779, C3Y0C3
    Conserved Domains (1) summary
    pfam10186
    Location:42 → 417
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

  3. XM_035821369.1 → XP_035677262.1  beclin 1-associated autophagy-related key regulator-like isoform X3

    UniProtKB/TrEMBL
    A0A9J7L736, C3Y0C3
    Conserved Domains (1) summary
    pfam10186
    Location:42 → 378
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14
Nucleotide Protein Strain
Heading Accession and Version

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