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LOC118413113 ectopic P granules protein 5 homolog [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118413113, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118413113
Gene description
ectopic P granules protein 5 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC118413113 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
50
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 4 NC_049982.1 (32347786..32437291, complement)

Chromosome 4 - NC_049982.1Genomic Context describing neighboring genes Neighboring gene sodium/bile acid cotransporter 4-like Neighboring gene conserved oligomeric Golgi complex subunit 8-like Neighboring gene uncharacterized LOC118413118 Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 Neighboring gene leucine-rich repeat-containing protein 15-like Neighboring gene uncharacterized LOC118412837 Neighboring gene nucleolysin TIAR-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049982.1 Chromosome 4 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ectopic P granules protein 5 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049982.1 Reference Bfl_VNyyK Primary Assembly

    Range
    32347786..32437291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035816287.1 → XP_035672180.1  ectopic P granules protein 5 homolog

    UniProtKB/TrEMBL
    A0A9J7KY70
    Conserved Domains (1) summary
    COG5271
    Location:28 → 344
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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