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LOC118409697 chondroitin sulfate synthase 1-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118409697, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118409697
Gene description
chondroitin sulfate synthase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118409697 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 2 NC_049980.1 (30543688..30555028)

Chromosome 2 - NC_049980.1Genomic Context describing neighboring genes Neighboring gene histone lysine acetyltransferase CREBBP-like Neighboring gene chondroitin sulfate synthase 3-like Neighboring gene coatomer subunit epsilon-like Neighboring gene neuroendocrine convertase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049980.1 Chromosome 2 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049980.1 Reference Bfl_VNyyK Primary Assembly

    Range
    30543688..30555028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035810934.1 → XP_035666827.1  chondroitin sulfate synthase 1-like

    UniProtKB/TrEMBL
    A0A9J7MGA4, C3ZXI0
    Conserved Domains (2) summary
    cl11394
    Location:230 → 620
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl21608
    Location:80 → 274
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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