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LOC118406766 protein O-mannosyl-transferase TMTC1-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118406766, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118406766
Gene description
protein O-mannosyl-transferase TMTC1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118406766 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 19 NC_049997.1 (1503222..1525554)

Chromosome 19 - NC_049997.1Genomic Context describing neighboring genes Neighboring gene GDP-L-fucose synthase-like Neighboring gene ankyrin-3-like Neighboring gene protein O-mannosyl-transferase TMTC1-like Neighboring gene insulin-like growth factor-binding protein complex acid labile subunit Neighboring gene uncharacterized LOC118406344 Neighboring gene rab11 family-interacting protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049997.1 Chromosome 19 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049997.1 Reference Bfl_VNyyK Primary Assembly

    Range
    1503222..1525554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035807077.1 → XP_035662970.1  protein O-mannosyl-transferase TMTC1-like

    UniProtKB/TrEMBL
    A0A9J7HRA6
    Conserved Domains (4) summary
    TIGR02917
    Location:199 → 534
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:210 → 238
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:144 → 177
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:1 → 26
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

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