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LOC118405385 trehalose-6-phosphate synthase-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118405385, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118405385
Gene description
trehalose-6-phosphate synthase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118405385 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 18 NC_049996.1 (12075456..12079765, complement)

Chromosome 18 - NC_049996.1Genomic Context describing neighboring genes Neighboring gene calcium vector protein Neighboring gene uncharacterized LOC118405386 Neighboring gene uncharacterized LOC118405384 Neighboring gene neurobeachin-like protein 1 Neighboring gene uncharacterized LOC118405377 Neighboring gene uncharacterized LOC118405376

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049996.1 Chromosome 18 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trehalose-6-phosphate synthase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049996.1 Reference Bfl_VNyyK Primary Assembly

    Range
    12075456..12079765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035804870.1 → XP_035660763.1  trehalose-6-phosphate synthase-like

    UniProtKB/TrEMBL
    C3YYV7
    Conserved Domains (1) summary
    cl10013
    Location:4 → 488
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein Strain
Heading Accession and Version

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