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LOC118404540 exostosin-like 3 [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118404540, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118404540
Gene description
exostosin-like 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118404540 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 17 NC_049995.1 (7155336..7174520, complement)

Chromosome 17 - NC_049995.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 1-like Neighboring gene zinc finger protein 2 homolog Neighboring gene uncharacterized LOC118404092 Neighboring gene protein-arginine deiminase type-2-like Neighboring gene tripartite motif-containing protein 54-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049995.1 Chromosome 17 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049995.1 Reference Bfl_VNyyK Primary Assembly

    Range
    7155336..7174520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035803688.1 → XP_035659581.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A9J7HHJ6, C3YMV1
    Conserved Domains (3) summary
    pfam03016
    Location:188 → 495
    Exostosin; Exostosin family
    pfam06005
    Location:87 → 144
    ZapB; Cell division protein ZapB
    pfam09258
    Location:657 → 894
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_035803686.1 → XP_035659579.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A9J7HHJ6, C3YMV1
    Conserved Domains (3) summary
    pfam03016
    Location:188 → 495
    Exostosin; Exostosin family
    pfam06005
    Location:87 → 144
    ZapB; Cell division protein ZapB
    pfam09258
    Location:657 → 894
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_035803687.1 → XP_035659580.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A9J7HHJ6, C3YMV1
    Conserved Domains (3) summary
    pfam03016
    Location:188 → 495
    Exostosin; Exostosin family
    pfam06005
    Location:87 → 144
    ZapB; Cell division protein ZapB
    pfam09258
    Location:657 → 894
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein Strain
Heading Accession and Version

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