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LOC118403245 beta-1,3-galactosyltransferase 1-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118403245, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118403245
Gene description
beta-1,3-galactosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC118403245 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 16 NC_049994.1 (3155073..3166065)

Chromosome 16 - NC_049994.1Genomic Context describing neighboring genes Neighboring gene UPF0691 protein C9orf116 homolog Neighboring gene sperm-associated antigen 16 protein-like Neighboring gene uracil-DNA glycosylase-like Neighboring gene Werner syndrome ATP-dependent helicase homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049994.1 Chromosome 16 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049994.1 Reference Bfl_VNyyK Primary Assembly

    Range
    3155073..3166065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035801850.1 → XP_035657743.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A9J7KFH4
    Conserved Domains (1) summary
    cl21608
    Location:239 → 425
    Galactosyl_T; Galactosyltransferase

  2. XM_035801851.1 → XP_035657744.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A9J7KFH4
    Conserved Domains (1) summary
    cl21608
    Location:239 → 425
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_004829626.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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